PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003844m
Common NameCICLE_v10003844mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 287aa    MW: 32125.9 Da    PI: 8.2249
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003844mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05109131123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C++ Fs++  L  H++ H
  Ciclev10003844m 109 FSCNYCKREFSTSQALGGHQNAH 131
                      89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.68E-6106136No hitNo description
Gene3DG3DSA:3.30.160.603.2E-4107135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.1E-6108133IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.718109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MKALFLEASS AEASSIILAS SSEETSCMGK SDENKRMKMK HVVDAIDESR RPESSSSLLL  60
DLRLYNDDYL VCGSGLFNRM SMMNNNHCHE ENNGHPTSSE KKSSEARVFS CNYCKREFST  120
SQALGGHQNA HKQERAVAKR RQGVDQDVGA AAFGNQHFSF YSPYYSRFSP YYGSFNRSLG  180
VKMNSMIHKP VAYGSHPWPS ANYRFGLGSW LVRQGMNMKD PQQTRMRMNG LGISGSSSRF  240
EERDVLAATN IIHKDNPIAV DFLQRGDPLK SDHQEDPTEL DLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432359.10.0hypothetical protein CICLE_v10003844mg
TrEMBLV4V1D30.0V4V1D3_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-19C2H2 family protein